PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1257s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 790aa    MW: 88360.8 Da    PI: 6.6789
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1257s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22129230199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +g++v
  SapurV1A.1257s0090.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHEVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGESV 213
                             99*****************************86555544..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  SapurV1A.1257s0090.1.p 214 LFI--WNEKNQLLLGIRRA 230
                             ***..8899999****997 PP

2Auxin_resp119.82.2e-39255338183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  SapurV1A.1257s0090.1.p 255 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhIRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                             79*******************************98659*******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-48113258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-40122244IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-20128229No hitNo description
PfamPF023628.2E-21129230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815129231IPR003340B3 DNA binding domain
SMARTSM010192.7E-23129231IPR003340B3 DNA binding domain
PfamPF065071.8E-34255338IPR010525Auxin response factor
SuperFamilySSF542771.96E-7673754No hitNo description
PfamPF023093.6E-8677764IPR033389AUX/IAA domain
PROSITE profilePS5174524.683680764IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MKLSASGLGG QQAGQEGEKK CLNSELWHAC AGPLVSLPTV GSRVVYIPQG HSEQVAATTN  60
KEVDAHIPNY PSLPAQLICQ LHNVTMHADV ETDEVYAQMT LQPLTPQEQK ETFLPMDLGM  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELI ARDLHEVEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG ESVLFIWNEK NQLLLGIRRA TRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSCFTVFYN PRASPSEFVI PLSKYVKAVF HIRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSL FPLRLKRPWH PGSSSFLDSR DEASNGLIWL KDGSGEQGLP SLNFQANMLP  420
WMQQRLDPTM LGNDHTQRYQ AILAAGMQKL GGGDPLRQQF MQLQQPFQYL QQSSSPNPLL  480
QLQQQHQAIQ QSISHNILQP QNQISTDSLP RHLLQQQLNN QPNDQPQQHQ HAYHDGLHIQ  540
TDQLQRQQSN LPSPSFSKTE YMESSPKFTV STTMQNMLGS VCTEGSGNLL DFTRASQSTL  600
TEQLPQQSWV PKYAHQENPT LFGLLLPTTV PRYPTSTADT DVSSMPLGDS GFQNSLYGCG  660
QDSSELLPNA GQMDPPTPSR TFVKVYKSGS VGRSLDISRF SSYHELREEL AQMFGIEGKL  720
ENPHRSGWQL VFVDRENDVL LLGDDPWELF VNNVWYIKIL SPEDILKMGE QGVESSGTNA  780
MQRMSGGMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611535943388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479150.0EF147915.1 Populus trichocarpa clone WS0125_O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038345.10.0PREDICTED: auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLU5FJ270.0U5FJ27_POPTR; Auxin response factor
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8